Protein Information

Protein ZmCA3P17
ZmCA3P17 is a protein in the CCAAT-HAP3 family.
Information
TF Name:	ZmCA3P17
Species:	Maize
TF Family:	CCAAT-HAP3
Gene Name(Synonym):	ZmCADR6
Uniprot ID:	A0A1D6PDQ1
Subgenome:	2

ZmCA3P17 is a protein in the CCAAT-HAP3 family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
	CCAAT-Dr1	NF-YB	PF00808
Zm00001eb108760_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Gene ID	Type	Sequence	FIMO	Position
Zm00001d006813	DAPseq	sequence	fimo	position
Zm00001d006813	DAPseq	sequence	fimo	position
Zm00001d006813	ChIPseq	sequence	fimo	position
Zm00001d006813	PChIPseq	sequence	fimo	position

Interactions where ZmCA3P17 is the regulator

There are no protein-dna interactions that fit this criteria.

Interactions where ZmCA3P17 is the target
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There are 118 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb108760_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

MPDSDNDESGGPSNADFSSPREQDRFLPIANVSRIMKKALPANAKISKDGKETVQECVSEFISFITGEASDKCQREKRKT
INGDDLLWAMTTLGFEDYVEPLKLYLHKFRELEGDKAAAGSQPPPPPSSTHNGAGVPVGYGMYGAGGGSGMIMMMGQPMY
PPAASSGYSQQPPHHQMSMGGKGGAYGHCDGSSSSPSGLRRHDGL

Secondary Structure Color Code
BEND	region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P	left-handed polyproline helix
HELX_RH_3T_P	right-handed 3-10 helix
HELX_RH_AL_P	right-handed alpha helix
HELX_RH_PI_P	right-handed pi helix
STRN	beta strand
TURN_TY1_P	type I turn
UNDETERMINED	no data available

Domains Present
CCAAT-Dr1
PF00808
NF-YB
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Nucleotide Sequence
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GCGCCGGTGCCCCCATTCTCCACTC...

GRMZM2G180947_T01 from maize genome v3

Related TFome: pUT4713

Amino Acid Sequence
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Nucleotide Sequence
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GGGACCACCCCGTGGATCACGCACC...

Zm00001d006813_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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ATGCCGGACTCCGACAACGACGAGT...

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Protein ZmCA3P17

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Interactions where ZmCA3P17 is the regulator

Interactions where ZmCA3P17 is the target
Expand

Zm00001eb108760_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

Nucleotide Sequence
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Expand

GRMZM2G180947_T01 from maize genome v3

Amino Acid Sequence
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Nucleotide Sequence
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Zm00001d006813_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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